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Then convert: #install using BiocManager::install("convert") Project <- backgroundCorrect(project, method="normexp", offset=50) Project <- read.maimages(targetinfo,source="genepix") Targetinfo <- readTargets("TargetBeta7.txt")
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I cannot see your target files, so I have no clue what the background correction is done over.Ī good way to convert is to use the convert package as shown in this manual for expression set, so below I used an example data similar to yours: library(limma) The short answer is you should use the M values.
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